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118. Qianxi Liang, Wei Ren, Boya Jin, Liang Qiao, Xichuan Ge , Yunzhe Fu , Xiaoqi Lyu, Meiqi Li*, Peng Xi* High-fidelity tissue super-resolution imaging achieved with confocal2 spinning-disk image scanning microscopy, Light: Science & Applications (2025, in press).
117. Yunzhe Fu, Yiwei Hou, Qianxi Liang, Wenyi Wang, Xin Chen, Boya Jin, Jing Ling, Qiuchen Gu, Donghyun Kim, Pengli Zheng, Meiqi Li*, Peng Xi*, Triangle-beam interference structured illumination microscopy, Nature Photonics (2025, in press).
116. Hongyu Wang, Ruijie Cao, Wenyi Wang, Yaning Li, Peng Xi*, High-fidelity Cuda-based SIM parallel reconstruction method, Advanced Imaging (2025, in press)
115. Cao, R., Y. Li, Y. Zhou, M. Li, F. Lin, W. Wang, G. Zhang, G. Wang, B. Jin, W. Ren, Y. Sun, Z. Zhao, W. Zhang, J. Sun, Y. Hou, X. Xu, J. Hu, W. Shi, S. Fu, Q. Liang, Y. Lu, C. Li, Y. Zhao, Y. Li, D. Kuang, J. Wu, P. Fei, J. Qu* and P. Xi* , Dark-based optical sectioning assists background removal in fluorescence microscopy, Nature Methods 22, 1299-1310 (2025).
114. Zhanghao, K., Meiqi Li*, Xingye Chen, Wenhui Liu, Tianling Li, Yiming Wang, Fei Su, Zihan Wu, Chunyan Shan, Jiamin Wu, Yan Zhang, Jingyan Fu, Peng Xi*, Dayong Jin*. "Fast Segmentation and Multiplexing Imaging of Organelles in Live Cells." Nature Communications 16, no. 1: 2769 (2025).
113. Zhang, Renlong, Haoxian Zhou, Chenguang Wang, Xiaoyu Weng, Liwei Liu, Peng Xi*, and Junle Qu*. "Dual-Bessel-Beam Stimulated Emission Depletion Microscopy for Super-resolution Volumetric Projection Imaging of Lipid Droplet Dynamics." Nano Letters (2025).
112. Ma, Lingyu, Yiwei Hou, Peng Xi, Meiqi Li*, and Mingjian Sun*. "MG-UNet: multi-scale convolutional gate-based network for background-removal imaging in fluorescence microscopy." Optics Express 33, no. 6 (2025): 14236-14249.
111. Ge, Xichuan, Wei Ren, Chunyan Shan*, Peng Xi*, and Baoxiang Gao*. Using HBmito Crimson to Observe Mitochondrial Cristae Through STED Microscopy. Bio-protocol 15, no. 1 (2025) e5150.
110. Han Wang, Wenshu Wang, Xinzhu Xu, Meiqi Li, Peng Xi*, High-spatiotemporal-resolution structured illumination microscopy: principles, instrumentation, and applications, Photonics Insights 4(1), R01 (2025) Cover paper.
109. Ke, Qin, Suyi Zhong, Ying Chen, Dayong Jin, Peng Xi, and Karl Zhanghao. "Open-source Micro-Manager Plugin for Live-view Imaging of Fluorescent Dipoles." Journal of Visualized Experiments (JoVE) 217 (2025): e67755.
108. Shu Gao, Jing Sun, Yiwei Hou, Xichuan Ge, Ming Shi, Hongxi Zheng, Yan Zhang, Meiqi Li*, Baoxiang Gao*, and Peng Xi*. "HBimmCue: A Versatile Fluorescent Probe for Multi‐Scale Imaging of Lipid Polarity and Membrane Order in Inner Mitochondrial Membrane." Advanced Science (2025): 2414343.
107. Yao, Shiqing, Meiling Guan, Wei Ren, Peng Xi, Meiqi Li*, and Mingjian Sun*. "Slicing Network for Wide‐Field Fluorescence Image Based on the Improved U‐Net Model." Microscopy Research and Technique 88, no. 3 (2025): 678-685.
106. Ruijie Cao, Yaning Li, Wenyi Wang, Yunzhe Fu, Xiaoyu Bu, Dilizhatai Saimi, Jing Sun, Xichuan Ge, Shan Jiang, Yuru Pei, Baoxiang Gao, Zhixing Chen, Meiqi Li, and Peng Xi* (2025). Fast reconstruction and optical-sectioning three-dimensional structured illumination microscopy. The Innovation 6(2) 100757.
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105. Wei Ren, Meiling Guan, Qianxi Liang, Meiqi Li, Boya Jin, Guangxing Duan, Liya Zhang, Xichuan Ge, Hong Xu, Yiwei Hou, Baoxiang Gao, Sodmergen, Peng Xi*, Expanding super-resolution imaging versatility in organisms with multi-confocal image scanning microscopy, National Science Review 11(9), nwae303 (2024).
104. Fei Peng, Xiangnan Ai, Jing Sun, Xichuan Ge, Meiqi Li*, Peng Xi, Baoxiang Gao*, Fluorescence Lifetime Super-Resolution Imaging Unveil the Dynamic Relationship between Mitochondrial Membrane Potential and Cristae Structure Using the Förster Resonance Energy Transfer Strategy, Analytical Chemistry 96(27), 11052-11060 (2024)
103. Zikang Yang, Xinwei Li, Tingting Sun, Jiqing Bian, Xiaoyu Bu, Xichuan Ge, Jing Sun, Zugang Liu, Zhigang Xie, Peng Xi, Qi Ai*, Chao Wei*, Baoxiang Gao*, Multicolor Tuning of Perylene Diimides Dyes for Targeted Organelle Imaging In Vivo, Analytical Chemistry 96(30), 12331−12340 (2024)
102. Hai Yun, Songxu Jiang, Hao Chen, Youyang Zhu, Xinzhu Xu, Bingxiang Li, Peng Xi, Miao Jiang, and Qi-Huo Wei, Ultra-high spatial resolutions in photopatterning molecular orientations, Optics Express 32(18), pp. 31107-31119 (2024)
101. Hou, Y., Wang, W., Fu, Y., Ge, X., Li, M.*, Xi, P.*, Multi-resolution analysis enables fidelity-ensured deconvolution for fluorescence microscopy. eLight 4, 14 (2024).
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99. Ren, Wei, Xichuan Ge, Meiqi Li, Jing Sun, Shiyi Li, Shu Gao, Chunyan Shan*, Baoxiang Gao*, and Peng Xi*. "Visualization of cristae and mtDNA interactions via STED nanoscopy using a low saturation power probe." Light: Science & Applications 13, no. 1 (2024): 116.
98. Zhong, S., Qiao, L., Ge, X., Xu, X., Fu, Y., Gao, S., Zhanghao, K., Hao, H., Wang, W., Li, M. and Xi, P.*, 2024. Three-dimensional dipole orientation mapping with high temporal-spatial resolution using polarization modulation. PhotoniX, 5(1), p.12.
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97. Yaning Li, Ruijie Cao, Wei Ren, Yunzhe Fu, Yiwei Hou, Suyi Zhong, Karl Zhanghao, Meiqi Li, Peng Xi, High-speed Auto-Polarization Synchronization Modulation Three-dimensional Structured Illumination Microscopy, Advanced Photonics Nexus, 3(1): 016001 (2023)
96. R. Cao, G. Guo, W. Yue, Y. Huang, X. Li, C. Kai, Y. Li, J. Tu, D. Zhang, P. Xi*, Y. Ma*, Phase-Dislocation-Mediated High-Dimensional Fractional Acoustic- Vortex Communication. Research 6: 280 (2023)
95. J. Sun, X. Ge, B. Jin, S. Li, Y. Hou, S. Zhong, Z. Yang, P. Xi, M. Li*, B. Gao*, Super-resolution imaging of mitochondrial cristae using a more hydrophobic far-red Si-rhodamine probe, Chemical Communications, 59,13038-13041 (2023)
94. R. Cao, Y. Li, X. Chen, X. Ge, M. Li, M. Guan, Y. Hou, Y. Fu, X. Xu, S. Jiang, B. Gao, P. Xi*, Open-3DSIM: an Open-source three-dimensional structured illumination microscopy reconstruction platform, Nature Methods 20, 1183-1186 (2023).
93. Chen X, Zhong S, Hou Y, Cao R, Wang W, Li D, Dai Q, Kim D, Xi P*. Superresolution structured illumination microscopy reconstruction algorithms: a review. Light: Science & Applications. 12(1), 172 (2023).
92. Shuang Fu, Wei Shi, Tingdan Luo, Yingchuan He, Lulu Zhou, Jie Yang, Zhichao Yang, Jiadong Liu, Xiaotian Liu, Zhiyong Guo, Chengyu Yang, Chao Liu, Zhen-li Huang, Jonas Ries, Mingjie Zhang, Peng Xi, Dayong Jin, Yiming Li*, Field-dependent deep learning enables high-throughput whole-cell 3D super-resolution imaging. Nature Methods 20, 459–468 (2023).
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91. Taehwang Son, Gwiyeong Moon, Changhun Lee, Peng Xi, and Donghyun Kim*, Super-resolved three-dimensional near-field mapping by defocused imaging and tracking of fluorescent emitters, Nanophotonics 11(21): 4805–4819 (2022).
90. Xu, X., Jia, S. & Xi, P*. Raster-scanning Donut simplifies MINFLUX and provides alternative implement on other scanning-based microscopes. Light: Science and Applications 11, 171 (2022).
89. Chen, J., Yao, B., Yang, Z., Shi, W., Luo, T., Xi, P., D. Jin & Li, Y., Ratiometric 4Pi single-molecule localization with optimal resolution and color assignment. Optics Letters 47(2), 325-328. (2022)
88. Xu, X., Xi, P* Rare nanoparticles shine colors with low-power STED. Light: Science and Applications 11, 171 (2022).
87. Chao He*, Jianyu Lin, Jintao Chang, Jacopo Antonello, Ben Dai, Jingyu Wang, Jiahe Cui, Ji Qi, Min Wu, Daniel S. Elson, Peng Xi, Andrew Forbes, and Martin J. Booth, Full Poincaré polarimetry enabled through physical inference. Optica 9(10), 1109-1114 (2022).
86. Kun Zhao, Xinzhu Xu, Dayong Jin, Peng Xi*, Two-photon MINFLUX with doubled localization precision, eLight 2:5 (2022).
85. Yiming Wang, Meiling Guan, Yan Zhang*, Karl Zhanghao*, Peng Xi*, Glucose increases the length and spacing of the lattice structure of the axon initial segment, Microscopy Research and Technique, 85:2679–2691 (2022)
84. Meiling Guan, Miaoyan Wang, Karl Zhanghao, Xu Zhang, Meiqi Li, Wenhui Liu, Jing Niu, Xusan Yang, Long Chen, Zhenli Jing, Micheal Q. Zhang, Dayong Jin, Peng Xi & Juntao Gao, Polarization modulation with optical lock-in detection reveals universal fluorescence anisotropy of subcellular structures in live cells Light: Science and Applications 11:4 (2022).
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83. Yiming Wang, Meiling Guan, Han Wang, Yu Li, Karl Zhanghao*, Peng Xi*, Yan Zhang*, The largest isoform of Ankyrin-G is required for lattice structure of the axon initial segment, Biochemical and Biophysical Research Communications 578, pp. 28-34 (2021).
82. Xinzhu Xu, Kun Zhao, Wei Ren, Zhaoyang Wu, Wentao Yu, Chendi Shao, Kebin Shi*, Peng Xi*, A protocol for single-source dual-pulse stimulated emission depletion setup with Bessel modulation, Microscopy Research and Technique https://doi.org/10.1002/jemt.23922 (2021).
81. Hongjin Li, Zihan Wu, Zhichao Yang, Karl Zhanghao*, Peng Xi*, Dayong Jin*, Axially overlapped multi-focus light sheet with enlarged field of view, Applied Physics Letters 118:223701 (2021).
80. Jiamin Wu, Zhi Lu, Dong Jiang, Yuduo Guo, Hui Qiao, Yi Zhang, Tianyi Zhu, Yeyi Cai, Xu Zhang, Karl Zhanghao, Hao Xie, Tao Yan, Guoxun Zhang, Xiaoxu Li, Zheng Jiang, Xing Lin, Lu Fang, Bing Zhou, Peng Xi, Jingtao Fan*, Li Yu*, Qionghai Dai*, Iterative tomography with digital adaptive optics permits hour-long intravital observation of 3D subcellular dynamics at millisecond scale, Cell doi: 10.1016/j.cell.2021.04.029 (2021)
79. Wu, Zhaoyang, Xinzhu Xu, and Peng Xi*. "Stimulated emission depletion microscopy for biological imaging in four dimensions: A review." Microscopy Research and Technique (2021).
78. Man, Z., Cui, H., Lv, Z., Xu, Z.*, Wu, Z., Wu, Y., Liao, Q., Liu, M., Xi, P.*, Zheng, L.* and Fu, H.*, 2021. Organic Nanoparticles-Assisted Low-Power STED Nanoscopy. Nano Letters 21(8), 3487–3494 (2021)
77. Y. Liu, Z. Zhou, F. Wang, G. Kewes, S. Wen, S. Burger, ME Wakiani, P. Xi, J. Yang, X. Yang, O. Benson*, D. Jin, Axial localization and tracking of self-interference nanoparticles by lateral point spread functions. Nature Communications 12(1), 1-9 (2021).
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76. Karl Zhanghao*, Wenhui Liu, Meiqi Li, Zihan Wu, Xiao Wang, Xingye Chen, Chunyan Shan, Haoqian Wang, Xiaowei Chen, Qionghai Dai, Peng Xi*, Dayong Jin*, High-dimensional super-resolution imaging reveals heterogeneity and dynamics of subcellular lipid membranes, Nature Communications, 11: 5890 (2020).
75. Chen X, Zhanghao K, Li M, Qiao C, Liu W, Xi P*, Dai Q*. Enhanced reconstruction of structured illumination microscopy on a polarized specimen. Optics Express. 2020; 28(17):25642-54.
74. X. Yang, Z. Yang, Z. Wu, Y. He, C. Shan, P. Chai, C. Ma, M. Tian, J. Teng, D. Jin, W. Yan, P. Das, J. Qu*, P. Xi*, “Mitochondrial dynamics quantitatively revealed by sted nanoscopy with an enhanced squaraine variant probe” Nature Communications 11:3699 (2020).
73. Wang, M., Li, M., Jiang, S., Gao, J. and Xi, P.*, Plasmonics meets super-resolution microscopy in biology. Micron 137:102916. (2020).
72. Jiang, S., Guan, M., Wu, J., Fang, G., Xu, X., Jin, D., Liu, Z., Shi, K., Bai, F., Wang, S. and Xi, P.*, 2020. Frequency-domain diagonal extension imaging. Advanced Photonics, 2(3), p.036005.
71. Li, M., Li, Y., Liu, W., Lal, A., Jiang, S., Jin, D., ... & Xi, P.*. Structured illumination microscopy using digital micro-mirror device and coherent light source. Applied Physics Letters, 116(23), 233702 (2020).
70. H. Yang, S. Zhang, P. Liu, L. Cheng, F. Tong, H. Liu, S. Wang, M. Liu, C. Wang, Y. Peng, F. Xie, B. Zhou, Y. Cao, J. Guo, Y. Zhang, Y. Ma, D. Shen, P. Xi, S. Wang*, “Use of High-Resolution Full-Field Optical Coherence Tomography and Dynamic Cell Imaging for Rapid Intraoperative Diagnosis During Breast Cancer Surgery”, Cancer (2020) DOI: 10.1002/cncr.32838.
69. C. Hu, Z. Wu, X. Yang, W. Zhao, C. Ma, M. Chen, P. Xi*, H. Chen*, “MUTE-SIM: multiphoton up-conversion time-encoded structured illumination microscopy”, OSA Continuum 3(3), 594-608 (2020)
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67. Xiaoxia Wu, Jie Shu, Bo Feng, Lingyan Yang, Jinze Lan, Fan Li, Peng Xi*, Fu Wang*, "One-step synthesis of novel phosphorus nitride dots for two-photon imaging in living cells." Chemical Communications 55(32): 4719-4722(2019).
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62. Ma, T., Chen, L., Shi, M., Niu, J., Zhang, X., Yang, X., Zhanghao, K., Wang, M., Xi, P., Jin, D. and Zhang, M., “Developing novel methods to image and visualize 3D genomes”, Cell biology and toxicology, 34(5) 267-380 (2018).
61. M. Wang, M. Chen, K. Zhanghao, X. Zhang, Z. Jing, J. Gao, P. Xi*, Z. Dai*, Q. Dai*, Polarization-based super-resolution imaging of surface-enhanced raman scattering nanoparticles with orientational information. Nanoscale doi: 10.1039/c8nr04808h (2018)
60. C. Chen, F. Wang*, S. Wen, Q. P. Su, M. C. Wu, Y. Liu, I. Aharonovich, M. Toth, S. P. Jackson, P. Xi, D. Jin*, “Multi-photon near-infrared emission saturation nanoscopy using upconversion nanoparticles”, Nature Communications, 9(1), 3290 (2018).
59. Z. Zeng, J. Ma, P. Xi, C. Xu*. "Joint tagging assisted fluctuation nanoscopy enables fast high-density super--resolution imaging." Journal of biophotonics e201800020 (2018).
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57. Xiaoshuai Huang, Junchao Fan, Liuju Li, Haosen Liu, Runlong Wu, Yi Wu, Lisi Wei, Heng Mao, Amit Lal, Peng Xi, Liqiang Tang, Yunfeng Zhang, Yanmei Liu, Shan Tan, Liangyi Chen Fast, long-term, super-resolution imaging with Hessian structured illumination microscopy. Nature Biotechnology, 36(5), 451 (2018).
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53. Y. Liu, Y. Lu*, X. Yang, X. Zheng, S. Wen, F. Wang, X. Vidal, T. Zhao, D. Liu, Z. Zhou, C. Ma, J. Zhou, J. Piper, P. Xi*, and D. Jin*, “Amplified stimulated emission in upconversion nanoparticles for super resolution nanoscopy,” Nature 543, 229–233 (2017).
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16. Z. Li, P. Huang, X. Zhang, J. Lin, R. He, B. Liu, X. Zhang, S. Yang, P. Xi, X. Zhang, Q. Ren and D. Cui, “Arginine-Glycine-Aspartic Acid-Conjugated Dendrimer-Modified QuantumDots for Targeting and Imaging Melanoma”, Journal of Nanoscience and Nanotechnology, 10(8), 4859-4867 (2010)
[2009]
15. Y. Shang, Z. Wang, Y. Pang, P. Xi*, Q. Ren*, “The role of mast cells in non-ablative laser resurfacing with 1,320 nm neodymium:yttrium– aluminium –garnet laser”, Lasers in Medical Science 25(3) 371-377 (2009).
14. M. Jiang, C. Zhou, W. Wang, P. Xi, Q. Ren, “Comparative analysis of Zernike aberrations generation with deformable mirrors for ocular adaptive optics”, J. Modern Optics, 56(16) 1741-1746 (2009).
13. P. Xi, Y. Andegeko, D. Pestov, V. V. Lozovoy, M. Dantus, “ Two-photon imaging using adaptive phase compensated ultrashort laser pulses”, Journal of Biomedical Optics 14(1) 014002, (2009).
[2008&Before]
12. P. Xi, Y. Andegeko, L. R. Weisel, V. V. Lozovoy, M. Dantus, “Greater signal, increased depth, and less photobleaching in two-photon microscopy with 10 femtosecond pulses”, Optics Communications 281(4), 1841-1849 (2008). [SCI IF=1.314]
11. P. Xi, B. Rajwa, J. Jones, J. P. Robinson, “The design and construction of a cost-efficient confocal microscope”, American J. Physics, 75(3), 203-207 (2007).
10. Y. Wu, P. Xi, J. Qu, et al., “Depth-resolved fluorescence spectroscopy of normal and dysplastic cervical tissue,” Optics Express, 13 (2), 382-388 (2005)
9. Y. Wu, P. Xi, J. Y. Qu, T. Cheung, and M. Yu, “Depth-resolved fluorescence spectroscopy reveals layered structure of tissue,” Opt. Express 12(14), 3218-3223, 2004.
8. E. Dai, P. Xi, C. Zhou, L. Liu, “Multifunctional double-layered diffractive optical element”, Opt. Lett., 28(17), 1513-1515, 2003.
7. P. Xi, C. Zhou, E. Dai, L. Liu, “Generation of near field hexagonal array illumination”, Opt. Lett., 27(4), 228-230, 2002.
6. P. Xi, C. Zhou, E. Dai, L. Liu, “A novel method for ultrashort laser pulse-width measurement based on self-diffractive effect”, Opt. Express, 10(20), 1099-1104, 2002.
5. P. Xi, C. Zhou, S. Zhao, L. Liu, “Phase contrast hexagonal array illumination”, Opt. Comm., 192(3~6) 193-197, 2001. [SCI IF=1.314, Cited: 3]
4. C. Zhou, P. Xi, S. Zhao, L. Liu, “Simple equations for pi-phase-modulated Talbot illuminator”, Microwave & Optical Technology Letters, 29(1), 49-52, (2001).
3. S. Zhao, C. Zhou, P. Xi, H. Wang, L. Liu “Number of phase levels in a two-dimensional separable Talbot array illuminator”, J. Opt. Soc. Am. A, 2001, 18(1): 103~107
2. C. Zhou, H. Wang, S. Zhao, P. Xi, L. Liu, “Number of Phase Levels of a Talbot Array Illuminator”, Appl. Opt., 40(5), 607-613, 2001. [SCI IF=1.701,Cited: 14]
1. H. Wang, C. Zhou, S. Zhao, P. Xi, and L. Liu, “The temporal Fresnel diffractive field of a grating illuminated by an ultrashort pulsed-laser beam”, J. Opt. A: Pure Appl. Opt. 3, 159-163 (2001).
Journal Publications
