
[2025]
118. Qianxi Liang, Wei Ren, Boya Jin, Liang Qiao, Xichuan Ge , Yunzhe Fu , Xiaoqi Lyu, Meiqi Li*, Peng Xi* High-fidelity tissue super-resolution imaging achieved with confocal2 spinning-disk image scanning microscopy, Light: Science & Applications (2025, in press).
117. Yunzhe Fu, Yiwei Hou, Qianxi Liang, Wenyi Wang, Xin Chen, Boya Jin, Jing Ling, Qiuchen Gu, Donghyun Kim, Pengli Zheng, Meiqi Li*, Peng Xi*, Triangle-beam interference structured illumination microscopy, Nature Photonics (2025, in press).
115. Cao, R., Y. Li, Y. Zhou, M. Li, F. Lin, W. Wang, G. Zhang, G. Wang, B. Jin, W. Ren, Y. Sun, Z. Zhao, W. Zhang, J. Sun, Y. Hou, X. Xu, J. Hu, W. Shi, S. Fu, Q. Liang, Y. Lu, C. Li, Y. Zhao, Y. Li, D. Kuang, J. Wu, P. Fei, J. Qu* and P. Xi* , Dark-based optical sectioning assists background removal in fluorescence microscopy, Nature Methods 22, 1299-1310 (2025).
114. Zhanghao, K., Meiqi Li*, Xingye Chen, Wenhui Liu, Tianling Li, Yiming Wang, Fei Su, Zihan Wu, Chunyan Shan, Jiamin Wu, Yan Zhang, Jingyan Fu, Peng Xi*, Dayong Jin*. "Fast Segmentation and Multiplexing Imaging of Organelles in Live Cells." Nature Communications 16, no. 1: 2769 (2025).
110. Han Wang, Wenshu Wang, Xinzhu Xu, Meiqi Li, Peng Xi*, High-spatiotemporal-resolution structured illumination microscopy: principles, instrumentation, and applications, Photonics Insights 4(1), R01 (2025) Cover paper.
108. Shu Gao, Jing Sun, Yiwei Hou, Xichuan Ge, Ming Shi, Hongxi Zheng, Yan Zhang, Meiqi Li*, Baoxiang Gao*, and Peng Xi*. "HBimmCue: A Versatile Fluorescent Probe for Multi‐Scale Imaging of Lipid Polarity and Membrane Order in Inner Mitochondrial Membrane." Advanced Science (2025): 2414343.
106. Ruijie Cao, Yaning Li, Wenyi Wang, Yunzhe Fu, Xiaoyu Bu, Dilizhatai Saimi, Jing Sun, Xichuan Ge, Shan Jiang, Yuru Pei, Baoxiang Gao, Zhixing Chen, Meiqi Li, and Peng Xi* (2025). Fast reconstruction and optical-sectioning three-dimensional structured illumination microscopy. The Innovation 6(2) 100757.
[2023]
93. R. Cao, Y. Li, X. Chen, X. Ge, M. Li, M. Guan, Y. Hou, Y. Fu, X. Xu, S. Jiang, B. Gao, P. Xi*, Open-3DSIM: an Open-source three-dimensional structured illumination microscopy reconstruction platform, Nature Methods 20, 1183-1186 (2023).
92. Chen X, Zhong S, Hou Y, Cao R, Wang W, Li D, Dai Q, Kim D, Xi P*. Superresolution structured illumination microscopy reconstruction algorithms: a review. Light: Science & Applications. 2023 Jul 12;12(1):172.
72. Jiang, S., Guan, M., Wu, J., Fang, G., Xu, X., Jin, D., Liu, Z., Shi, K., Bai, F., Wang, S. and Xi, P.*, 2020. Frequency-domain diagonal extension imaging. Advanced Photonics, 2(3), p.036005.
71. Li, M., Li, Y., Liu, W., Lal, A., Jiang, S., Jin, D., ... & Xi, P.. Structured illumination microscopy using digital micro-mirror device and coherent light source. Applied Physics Letters, 116(23), 233702 (2020). Highlighted by SciLight.
[2019]
64. L. Chen, M. Wang, X. Zhang, M. Zhang, Y. Hu, Z. Shi, P. Xi, and J. Gao, “Group-sparsity-based super-resolution dipole orientation mapping (GS-SDOM),” IEEE Transactions on medical imaging 38,2687-2694 (2019).
63. K. Zhanghao, X. Chen, M. Li, Y. Liu, W. Liu, S. Luo, X. Wang, K. Zhao, A. Lai, C. Shan, H. Xie, Y. Zhang, X. Li, Q. Dai, and P. Xi, “Super-resolution Imaging of Fluorescent Dipoles by Polarized Structured Illumination Microscopy,” Nature Communications 10, 4694 (2019).
[2018]
61. M. Wang, M. Chen, K. Zhanghao, X. Zhang, Z. Jing, J. Gao, P. Xi*, Z. Dai*, Q. Dai*, Polarization-based super-resolution imaging of surface-enhanced raman scattering nanoparticles with orientational information. Nanoscale 10, 19757-19765 (2018)
58. A. Lal, C. Shan, K. Zhao, W. Liu, X. Huang, W. Zong, L. Chen, P. Xi*, A frequency domain SIM reconstruction algorithm using reduced number of images. IEEE Transactions on Image Processing 27(9), 4555-4570 (2018).
56. D. Jin*, P. Xi*, B. Wang, L. Zhang, J. Enderlein*, A. M. Oijen*, “Nanoparticles for super-resolution microscopy and single-molecule tracking”, Nature Methods, 15, 415-423 (2018).
[2017]
52. Y. Liu, Y. Lu*, X. Yang, X. Zheng, S. Wen, F. Wang, X. Vidal, T. Zhao, D. Liu, Z. Zhou, C. Ma, J. Zhou, J. Piper, P. Xi*, and D. Jin*, “Amplified stimulated emission in upconversion nanoparticles for super resolution nanoscopy,” Nature 543, 229–233 (2017).
A full list of all the journal papers can be found here.
Representative Publications

